Add nf-core pipelines containers create-configs - #4454
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Regenerates the pipeline `conf/containers_*.config` files on demand. Previously this was only possible as a side effect of other commands (`pipelines create`, `modules install/update/remove/patch`) or via `pipelines lint --fix container_configs`, which refuses to run on a dirty git tree. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
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Trying to streamline steps for template syncs. I want to be able to programmatically regenerate the containers, but linting refuses to run if there's unstaged changes in git, for safety. That's safe for most things but annoying in the middle of a merge conflict resolution.
This PR adds a tiny command to regenerate the pipeline
conf/containers_*.configfiles on demand, without needing a clean git tree:Alternative approach would be to have a
--forceflag or something for linting to allow it to run anywhere. Open to suggestions! Also happy to just close and put up with committing first, it's not that bad.PR checklist
CHANGELOG.mdis updateddocsis updated🤖 Generated with Claude Code