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Pull requests: nf-core/modules

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178 Open 8,589 Closed
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Pull requests list

Update fusion-report version to 4.1.2 size/xs
#12101 opened Jun 18, 2026 by apeltzer Member • Draft
17 tasks
Update to topic ltrharvest
#12049 opened Jun 18, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
New module echtvar/anno
#12044 opened Jun 18, 2026 by sofiademmou Contributor • Draft
17 tasks
1
Update bakta modules to 1.120
#12041 opened Jun 18, 2026 by jfy133 Member Loading…
17 tasks
4
New module echtvar/encode
#12040 opened Jun 18, 2026 by sofiademmou Contributor Loading…
17 tasks
1
Varscan topic size/m
#12038 opened Jun 18, 2026 by SPPearce Contributor Loading…
6
Add finaletoolkit/endmotifs
#12035 opened Jun 18, 2026 by lbeltrame Contributor Loading…
12 of 17 tasks
@lbeltrame
Swap viennarna to topics size/m
#12034 opened Jun 18, 2026 by SPPearce Contributor Loading…
Swap vrhyme to topic size/m
#12033 opened Jun 18, 2026 by SPPearce Contributor Loading…
Add AGENTS.md
#12028 opened Jun 17, 2026 by itrujnara Contributor Loading…
1 task done
add-new-tool: rami2d/register and rami2d/transform imaging new module Adding a new module
#12027 opened Jun 17, 2026 by kubranarci Contributor Loading…
6 of 17 tasks
@kubranarci
4
Readd dataset version extraction
#12026 opened Jun 17, 2026 by ammaraziz Contributor Loading…
2 tasks done
5
migrate lissero module to topic channels
#12025 opened Jun 17, 2026 by Anifowak Contributor Loading…
9 of 14 tasks
1
3
Add BCF output, optional indexes and statistics, and brush up channels and arguments. size/m
#12024 opened Jun 17, 2026 by charles-plessy Contributor Loading…
17 tasks done
1
Add initial ciriquant module structure
#12023 opened Jun 16, 2026 by razmia02 • Draft
17 tasks
New module for mergestr
#12015 opened Jun 16, 2026 by KondratievaOlesya Contributor Loading…
11 of 17 tasks
1
5
New module suppa/generateevents
#12012 opened Jun 16, 2026 by piplus2 Contributor Loading…
12 of 17 tasks
Add new component: gridss/preprocess Ready for Review
#11988 opened Jun 12, 2026 by imsarath Contributor Loading…
13 of 17 tasks
1
@imsarath
5
Add HDL rg module
#11971 opened Jun 10, 2026 by lyh970817 Contributor • Draft
14 tasks done
Add HDL h2 module
#11970 opened Jun 10, 2026 by lyh970817 Contributor • Draft
14 tasks done
Add plink_gwas_regenie subworkflow
#11938 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add plink_fit_regenie subworkflow
#11937 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add new component cnvkit/segment
#11936 opened Jun 9, 2026 by aadecock Contributor Loading…
12 of 17 tasks
1
@aadecock
5
Add new refinegems nf-core module with config-generation interface
#11935 opened Jun 9, 2026 by Copilot AI • Draft
1
@brovolia
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
2
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