Release 1.0.0 (dev branch)#52
Open
vinisalazar wants to merge 301 commits into
Open
Conversation
Get linting to pass
Improve docs
Draft conda envs for humann modules
Support and test single reads
feat: add module diamond/blastx from nf-core
Bugfixes and regrouping for ec comparisons between humann and mifaser
Docs fixes
Add tool citation text and enable MultiQC methods description
add mermaid file and rendered with `nf-metro`
add metro pipeline image
- Remove action files while migration to v4 is not stable
- Code review for #52
Important! Template update for nf-core/tools v4.0.2 (fixing conflicts)
…annotation so tests pass
This simplifies the snapshot for the profiling submodule to properly ignore files created with headers containing exe paths etc. conda strict mode was intentionally reverted to flexible to allow install of humann4 from biobakery channel (not bioconda).
…om.askimed.nf.test.lang.workflow.WorkflowContext
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
7 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Investigating RGI test problem
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).