This repository was archived by the owner on Apr 15, 2026. It is now read-only.

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This repository was archived by the owner on Apr 15, 2026. It is now read-only.

Issues

Supplemental reads' primary component not filtered out
cmatKhan/callingCardsTools#22 · opened on Dec 31, 2025
Rename yeast_peak_calling to yeast_promoter_enrichment
cmatKhan/callingCardsTools#21 · opened on Dec 5, 2025
barcode counter needs improvement
cmatKhan/callingCardsTools#20 · opened on Jun 24, 2025
add r1 primer and r2 transposon to bamflag
cmatKhan/callingCardsTools#19 · opened on Jun 24, 2025
some data results in * in start/end
cmatKhan/callingCardsTools#15 · opened on Oct 23, 2024
When parsing fastq file, convert to BAM
cmatKhan/callingCardsTools#14 · opened on Jun 19, 2024
add yeast peak_calling and analysis to docs
cmatKhan/callingCardsTools#11 · opened on Dec 10, 2023
extract input path check to utils
cmatKhan/callingCardsTools#1 · opened on Sep 6, 2022