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Add Mindmap Brain segmentation model #788
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usmann56
opened on Sep 19, 2026
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- What: port the mindmap model to the MONAI bundle format
- Why: MONAI-ecosystem interoperability (MONAI Label, MONAI Deploy, monai.bundle tooling), not a replacement for brainchopC's own engine
- Model background: 18-class whole-brain segmentation (gray/white matter and subcortical structures), MeshNet-style dilated 3D CNN -- model16chan18cls's topology at 24 channels, from the brainchopC / brainchop-models project (neuroneural lab)
- Planned validation approach: checked against brainchopC's own CPU-backend reference outputs (voxel-level agreement; not expected to be fully bit-exact, since an 18-class segmentation has far more inter-class decision boundaries than a binary mask)
- A note that the bundle is already implemented and a PR will follow
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