Issues

• migrating Kraken documentation from the JHU CCB software website

  DerrickWood/kraken#166 · Filter by author dpuiu opened on Jul 28, 2026

• processing paired reads

  DerrickWood/kraken#165 · Filter by author pedres opened on Nov 26, 2024
  1

• Cant open file: [Errno 2] No such file or directory: 'prueba//results.spa'

  DerrickWood/kraken#164 · Filter by author Marcopterix opened on Apr 18, 2024

• Kraken2 error

  DerrickWood/kraken#163 · Filter by author jsalas0798 opened on Apr 6, 2023
  1

• rsync error

  DerrickWood/kraken#162 · Filter by author tala-kiyani opened on Mar 24, 2023

• errors with build kraken database

  DerrickWood/kraken#161 · Filter by author chaoyanggu opened on Feb 24, 2023

• problems with building kraken and kraken2 databases

  DerrickWood/kraken#159 · Filter by author itiago opened on Jun 14, 2022
  1

• Why classified reads are contaminated and unclassified are clean reads?

  DerrickWood/kraken#158 · Filter by author B-1991-ing opened on Jun 9, 2022

• Xargs: cat: terminated by signal 13 with kraken2-build --build.

  DerrickWood/kraken#156 · Filter by author kdbchau opened on Sep 30, 2021
  4

• xargs: cat: terminated by signal 13

  DerrickWood/kraken#154 · Filter by author jhcuarta opened on Jul 9, 2021

• what(): 'database_10916': File truncated

  DerrickWood/kraken#153 · Filter by author hafizmtalha opened on May 11, 2021
  1

• Issue with PLASMID download?

  DerrickWood/kraken#152 · Filter by author axemango opened on Mar 11, 2021
  3

• Kraken max length

  DerrickWood/kraken#151 · Filter by author JChristopherEllis opened on Mar 4, 2021

• How much time should be expected for building a database by kraken2-build?

  DerrickWood/kraken#149 · Filter by author Minh2021 opened on Jan 27, 2021

• Bioconda Kraken2 build standard database issue

  DerrickWood/kraken#148 · Filter by author JLNutrition opened on Nov 20, 2020
  1

• db_sort: unable to mmap database.jdb: Cannot allocate memory

  DerrickWood/kraken#147 · Filter by author MZNOTE opened on Oct 1, 2020

• kraken2-build error

  DerrickWood/kraken#146 · Filter by author dpak283 opened on Sep 15, 2020
  2

• gzip: .gz: not in gzip format

  DerrickWood/kraken#144 · Filter by author ShivaniTalekar opened on Jul 14, 2020

• Question on pairend reads

  DerrickWood/kraken#143 · Filter by author zeliy90 opened on Jun 26, 2020

• rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

  DerrickWood/kraken#142 · Filter by author mpozuelo-flomics opened on Apr 13, 2020
  1

• Cannot allocate memory error despite small hash size

  DerrickWood/kraken#141 · Filter by author joshua-theisen opened on Mar 10, 2020

• Seg fault on running Kraken2

  DerrickWood/kraken#140 · Filter by author TimFulcher opened on Nov 4, 2019
  4

• Functionality to join two kraken output files together

  change in progress
  DerrickWood/kraken#130 · Filter by author tayabsoomro opened on Oct 23, 2018
  6

• Strange --preload behaviour

  DerrickWood/kraken#128 · Filter by author Freemacl opened on Sep 5, 2018
  2

• kraken result kind of confusing

  DerrickWood/kraken#126 · Filter by author chloelulu opened on Jun 6, 2018