baybe/.github/workflows/regular.yml at main · emdgroup/baybe · GitHub

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name: Regular Checks
on:
  schedule:
    # Run roughly every 15 days at 02:08 UTC
    - cron: '8 2 1,16 * *'
  workflow_dispatch:

env:
  COVERAGE_OVERALL_THRESH: 70      # threshold for overall coverage check
  COVERAGE_INDIVIDUAL_THRESH: 45   # threshold for individual coverage check

permissions:
  contents: read

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:

  reminder:
    runs-on: ubuntu-latest
    name: "Reminder"
    continue-on-error: true
    permissions:
      issues: write  # Required for reminder-action to post issue comments
    steps:
      - name: check reminders and notify
        uses: agrc/reminder-action@ab1f38534c17a1c16ba96eaf5fb9c0015d509301 # v1

  # Warns about broken links in the docs. Especially useful for
  # those that point to our own github.io page (linkcheck is disabled in the
  # CI pipeline, because the respective pages are yet to be created at that time).
  docs:
    runs-on: ubuntu-latest
    permissions:
      contents: read
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        with: {python-version: "3.10"}
      - name: Build Docs
        run: |
          pip install tox-uv
          tox -e docs-py310 -- -r

  lint:
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'},
                      {semantic: '3.14', tox: 'py314'} ]
    name: Lint ${{ matrix.py-version.semantic }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run linting
        run: |
          pip install tox-uv
          tox -e lint-${{ matrix.py-version.tox }}

  typecheck:
    needs: [lint]
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'},
                      {semantic: '3.14', tox: 'py314'} ]
    name: Type Check ${{ matrix.py-version.semantic }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run type check
        run: |
          pip install tox-uv
          tox -e typecheck-${{ matrix.py-version.tox }}

  audit:
    needs: [lint]
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'},
                      {semantic: '3.14', tox: 'py314'} ]
    name: Audit ${{ matrix.py-version.semantic }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run pip-audit
        run: |
          pip install tox-uv
          tox -e audit-${{ matrix.py-version.tox }}

  coretest:
    needs: [typecheck, audit]
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'},
                      {semantic: '3.14', tox: 'py314'} ]
    name: Core Tests ${{ matrix.py-version.semantic }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run core tests
        run: |
          pip install tox-uv
          tox -e coretest-${{ matrix.py-version.tox }}

  fulltest:
    needs: [typecheck, audit]
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'} ]
    name: Full Tests ${{ matrix.py-version.semantic }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run full tests
        run: |
          pip install tox-uv
          tox -e fulltest-${{ matrix.py-version.tox }} -- --cov-report=xml
      - name: "Assert Overall Coverage"
        run: |
          pip install coverage
          coverage report --fail-under=${{ env.COVERAGE_OVERALL_THRESH }}
      - name: "Assert Individual Coverage"
        shell: bash
        run: |
          coverage report |
          grep -E -o '[0-9]+%' |
          tr -d '%' |
          sed '$d' |
          awk '{if ( $1<${{ env.COVERAGE_INDIVIDUAL_THRESH }} ) exit 1 }'

  gputest:
    if: ${{ github.event_name == 'workflow_dispatch' }}
    needs: [typecheck, audit]
    strategy:
      fail-fast: false
      matrix:
        py-version: [ {semantic: '3.10', tox: 'py310'},
                      {semantic: '3.11', tox: 'py311'},
                      {semantic: '3.12', tox: 'py312'},
                      {semantic: '3.13', tox: 'py313'},
                      {semantic: '3.14', tox: 'py314'} ]
    name: GPU Tests ${{ matrix.py-version.semantic }}
    runs-on: XS-GPU
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
        with:
          persist-credentials: false
      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v6
        id: setup-python
        with:
          python-version: ${{ matrix.py-version.semantic }}
      - name: Run GPU tests
        run: |
          pip install tox-uv
          tox -e gputest-${{ matrix.py-version.tox }}