OpticalBlock/large_block_temp_vs_diameter.yaml at master · CWRUChielLab/OpticalBlock · GitHub

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# Finds the minimum blocking temperature over a range of square block widths
{
    # axon geometry
    "axon_length"   : 1000,  # µm
    "axon_diameter" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1 ],
        "example_outputs" : [ 1, 10 ], # µm
        "new_input" : "sweep_param"
    },

    # stimulation settings
    "stim_amplitude"  : 100,   # nA
    "stim_duration"   : 0.1,   # ms

    # temperature
    "base_temp" : 16,
    "block_temp" : {
        "action" : "interpolate",
        "example_inputs" : [ 0, 1 ],
        "example_outputs" : [ "base_temp", 200 ],
        "new_input" : "threshold_param"
    },
    "axon_temperature" : { # °C
        "action" : "interpolate",
        "example_inputs" : [ 200, 200.00001, 800, 800.0001 ],
        "example_outputs" : [ "base_temp", "block_temp", "block_temp", "base_temp" ],
        "new_input" : "x"
    },

    # simulation settings
    "param_sweep_steps"   : 5,
    "num_sections"        : 3000,

    # plot settings
    "plot_x_variable" : "axon_diameter",
    "plot_y_variable" : "block_temp",
    "plot_title" : "Six hundred micron square block temperature vs axon diameter",
    "plot_x_axis_label" : "axon diameter (micrometers)",
    "plot_y_axis_label" : "block temperature (degrees Celsius)"
}